Package: idiogramFISH
Title: Shiny App. Idiograms with Marks and Karyotype Indices
Version: 2.0.13.9000
Date: 2024-06-06
Authors@R: c(person("Fernando", "Roa", email = "froao@unal.edu.co", role = c("aut", "cre") ), 
             person(given="Mariana PC Telles", email = "", role = c("ctb")) 
             )
Description: Plot idiograms of karyotypes, plasmids, circular chr.
        having a set of data.frames for chromosome data and optionally
        mark data. Two styles of chromosomes can be used: without or
        with visible chromatids. Supports micrometers, cM and Mb or any
        unit. Three styles of centromeres are available: triangle,
        rounded and inProtein; and six styles of marks are available:
        square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow
        (downArrow), exProtein (inProtein); its legend (label) can be
        drawn inline or to the right of karyotypes. Idiograms can also
        be plotted in concentric circles. It is possible to calculate
        chromosome indices by Levan et al. (1964)
        <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of
        Watanabe et al. (1999) <doi:10.1007/PL00013869> and
        Romero-Zarco (1986) <doi:10.2307/1221906> and classify
        chromosomes by morphology Guerra (1986) and Levan et al.
        (1964).
Depends: R (>= 3.5)
Imports: rlang, crayon, plyr, dplyr, tidyr, scales
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Suggests: rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
        rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
        RCurl, shiny, shinydashboard, rhandsontable, gtools,
        rclipboard, clipr, shinyjs
VignetteBuilder: rmdformats, knitr, kableExtra, rmarkdown, RCurl,
        rvcheck, badger, rentrez
SystemRequirements: pandoc (>= 3.2)
URL: https://ferroao.gitlab.io/manualidiogramfish/,
        https://ferroao.gitlab.io/idiogramfishhelppages
BugReports: https://gitlab.com/ferroao/idiogramFISH/-/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libicu-dev
Repository: https://ferroao.r-universe.dev
Date/Publication: 2024-06-06 15:50:17 UTC
RemoteUrl: https://gitlab.com/ferroao/idiogramfish
RemoteRef: HEAD
RemoteSha: 8f7ee88135dcfad5085ed79d292f98780c8a929d
NeedsCompilation: no
Packaged: 2026-10-15 09:01:02 UTC; root
Author: Fernando Roa [aut, cre],
  Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>